PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G036100.1
Common NamePOPTR_0019s05170g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 276aa    MW: 30886.6 Da    PI: 5.2272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G036100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-173584255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+  ++   + r +lg+f taeeAa+a+++a+  l+g
  Potri.019G036100.1 35 KFVGVRQRP-SGRWVAEIKYTTQ---NIRMWLGTFETAEEAARAYDEAACLLRG 84
                        799******.7******888332...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.95E-303591No hitNo description
SuperFamilySSF541711.57E-183592IPR016177DNA-binding domain
PROSITE profilePS5103219.1773592IPR001471AP2/ERF domain
PfamPF008479.4E-133584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-263591IPR001471AP2/ERF domain
SMARTSM003804.5E-333598IPR001471AP2/ERF domain
PRINTSPR003679.3E-83647IPR001471AP2/ERF domain
PRINTSPR003679.3E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEIHFQQEKK RRKASMPVSK TSKFKGISRP SSSNKFVGVR QRPSGRWVAE IKYTTQNIRM  60
WLGTFETAEE AARAYDEAAC LLRGSNTRTN FITRVSLDSP LASRIRNLLN NKRRDKQQQS  120
EEETAEVSTP PTSTIITTSA ITTSCCSSCS SISSCGMSTD SYSNSSSVHE TDILFDDAYK  180
PDLSNLIEEF KWVTSQSDLS WGFGPVFDGF AFSQEVLDFP KSVVSPGTSD LEFSEFDKMK  240
VERQISASLY AMNGVQEYME TIHDPIEALW DLPPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-143695363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1812KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325844.20.0hypothetical protein POPTR_0019s05170g
TrEMBLB9IPR20.0B9IPR2_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-25related to AP2 11